-
From genomes to hologenomes: integrating host and microbiome data for complex trait prediction in livestock and aquaculture
Venegas, Lucas; Ramayo-Caldas, Yuliaxis; Bohannan, Brendan J. M.; Derome, Nicolas; Yáñez, José Manuel
-
Empowering bioinformatics communities with Nextflow and nf-core
Langer, Bjoern E; Amaral, Andreia; Baudement, Marie-Odile; Bonath, Franziska; Charles, Mathieu; Chitneedi, Praveen Krishna; Clark, Emily L; Di...
-
Multi-omics surveillance of antimicrobial resistance in the pig gut microbiome
Guitart-Matas, J; de León, AVP; Pope, PB; Hvidsten, TR; Fraile, L; Ballester, M; Ramayo-Caldas, Y; Migura-Garcia, L
-
Co-occurring microbial guilds in pig fecal microbiota: key drivers and effects on host performance
Vourlaki, Ioanna-Theoni; Rio-Lopez, Raquel; Clavell-Sansalvador, Adria; Ramirez-Ayala, Lino C; Ballester, Maria; Sanchez, Juan P; Piles, Miriam;...
-
Identification of differentially expressed genes and polymorphisms related to intramuscular oleic-to-stearic fatty acid ratio in pigs
Valdes-Hernández, J; Ramayo-Caldas, Y; Passols, M; Criado-Mesas, L; Castello, A; Sanchez, A; Folch, JM
-
Gene Expression Signatures of Porcine Bone Marrow-Derived Antigen-Presenting Cells Infected with Classical Swine Fever Virus
Coronado, Liani; Wang, Miaomiao; Bohorquez, Jose Alejandro; Munoz-Aguilera, Adriana; Alberch, Monica; Martinez, Patricia; Ruggli, Nicolas;...
-
Effect of Group Mixing and Available Space on Performance, Feeding Behavior, and Fecal Microbiota Composition during the Growth Period of Pigs
Clavell-Sansalvador, A; Río-López, R; González-Rodríguez, O; García-Gil, LJ; Xifró, X; Zigovski, G; Ochoteco-Asensio, J; Ballester, M; Dalmau,...
-
Gene co-expression network analysis for porcine intramuscular fatty acid composition
Sebastia, C; Gallopin, M; Ramayo-Caldas, Y; Estelle, J; Valdes-Hernandez, J; Castello, A; Sanchez, A; Crespo-Piazuelo, D; Folch, J M
-
Short communication: Comparing the microbiota diversity from the core, middle part and rind of six Spanish commercial goat cheeses
Luigi-Sierra, Maria G; Ramayo-Caldas, Yuliaxis; Guan, Dailu; Amills, Marcel
-
Effect on Feeding Behaviour and Growing of Being a Dominant or Subordinate Growing Pig and Its Relationship with the Faecal Microbiota
Ochoteco-Asensio, J; Zigovski, G; Costa, LB; Rio-López, R; Clavell-Sansalvador, A; Ramayo-Caldas, Y; Dalmau, A
-
Impact of Nutritional Strategies to Prevent Post-Weaning Diarrhoea on Performance, Behaviour, and Microbiota in Piglets from Organic Farming
Bagaria, M; Ramayo-Caldas, Y; González-Rodríguez, O; Vila, L; Delás, P; Fàbrega, E
-
Gut microbiome and resistome characterization of pigs treated with commonly used post-weaning diarrhea treatments
Guitart-Matas, J; Ballester, M; Fraile, L; Darwich, L; Giler-Baquerizo, N; Tarres, J; López-Soria, S; Ramayo-Caldas, Y; Migura-Garcia, L
-
Identification of candidate regulatory genes for intramuscular fatty acid composition in pigs by transcriptome analysis
Valdes-Hernandez, Jesus; Folch, Josep M; Crespo-Piazuelo, Daniel; Passols, Magi; Sebastia, Cristina; Criado-Mesas, Lourdes; Castello, Anna; Sanchez,...
-
Recent Advances in Enteric Methane Mitigation and the Long Road to Sustainable Ruminant Production
Roques, S; Martinez-Fernandez, G; Ramayo-Caldas, Y; Popova, M; Denman, S; Meale, SJ; Morgavi, DP
-
Mutations on a conserved distal enhancer in the porcine C-reactive protein gene impair its expression in liver
Hernández-Banqué, C; Jové-Juncà, T; Crespo-Piazuelo, D; González-Rodríguez, O; Ramayo-Caldas, Y; Esteve-Codina, A; Mercat, MJ; Bink, MCAM;...
-
Copy Number Variation on ABCC2-DNMBP Loci Affects the Diversity and Composition of the Fecal Microbiota in Pigs
Ramayo-Caldas, Yuliaxis; Crespo-Piazuelo, Daniel; Morata, Jordi; Gonzalez-Rodriguez, Olga; Sebastia, Cristina; Castello, Anna; Dalmau, Antoni;...
-
Gut barrier-microbiota imbalances in early life lead to higher sensitivity to inflammation in a murine model of C-section delivery
Barone, M; Ramayo-Caldas, Y; Estelle, J; Tambosco, K; Chadi, S; Maillard, F; Gallopin, M; Planchais, J; Chain, F; Kropp, C; Rios-Covian, D; Sokol, H;...
-
Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues
Crespo-Piazuelo, D; Acloque, H; González-Rodríguez, O; Mongellaz, M; Mercat, MJ; Bink, MCAM; Huisman, AE; Ramayo-Caldas, Y; Sánchez, JP;...
-
On the holobiont 'predictome' of immunocompetence in pigs
Calle-García, J; Ramayo-Caldas, Y; Zingaretti, LM; Quintanilla, R; Ballester, M; Pérez-Enciso, M
-
Mixed management in growing and finishing pigs: Differences between gender and their impacts on behavior, growth performance, and physiological parameters
de Oliveira, ACD; Costa, LB; Weber, SH; Ramayo-Caldas, Y; Dalmau, A
-
Genetic architecture of innate and adaptive immune cells in pigs
Ballester, M; Jové-Juncà, T; Pascual, A; López-Serrano, S; Crespo-Piazuelo, D; Hernández-Banqué, C; González-Rodríguez, O; Ramayo-Caldas, Y;...
-
Hierarchy Establishment in Growing Finishing Pigs: Impacts on Behavior, Growth Performance, and Physiological Parameters
de Oliveira, ACD; Webber, SH; Ramayo-Caldas, Y; Dalmau, A; Costa, LB
-
Global analysis of the association between pig muscle fatty acid composition and gene expression using RNA-Seq
Valdes-Hernandez, Jesus; Ramayo-Caldas, Yuliaxis; Passols, Magi; Sebastia, Cristina; Criado-Mesas, Lourdes; Crespo-Piazuelo, Daniel; Esteve-Codina,...
-
Disentangling the causal relationship between rabbit growth and cecal microbiota through structural equation models
Mora, Monica; Velasco-Galilea, Maria; Pablo Sanchez, Juan; Ramayo-Caldas, Yuliaxis; Piles, Miriam
-
Modeling microRNA-driven post-transcriptional regulation using exon-intron split analysis in pigs
Marmol-Sanchez, Emilio; Cirera, Susanna; Zingaretti, Laura M; Jacobsen, Mette Juul; Ramayo-Caldas, Yuliaxis; Jorgensen, Claus B; Fredholm, Merete;...
-
Supplementation of xylo-oligosaccharides to suckling piglets promotes the growth of fiber-degrading gut bacterial populations during the lactation and nursery periods
González-Solé, F; Solà-Oriol, D; Ramayo-Caldas, Y; Rodriguez-Prado, M; Ortiz, GG; Bedford, MR; Pérez, JF
-
Use of Bayes factors to evaluate the effects of host genetics, litter and cage on the rabbit cecal microbiota
Velasco-Galilea, Maria; Piles, Miriam; Ramayo-Caldas, Yuliaxis; Varona, Luis; Sanchez, Juan Pablo
-
Longitudinal modelling of performance and feed efficiency traits in growing Duroc pigs
Herrera-Cáceres, W; Ramayo-Caldas, Y; Sánchez, JP
-
Understanding host-microbiota interactions in the commercial piglet around weaning
Saladrigas-Garcia, M; D'Angelo, M; Ko, H L; Nolis, P; Ramayo-Caldas, Y; Folch, J M; Llonch, P; Sola-Oriol, D; Perez, J F; Martin-Orue, S M
-
A Co-Association Network Analysis Reveals Putative Regulators for Health-Related Traits in Pigs
Crespo-Piazuelo, D; Ramayo-Caldas, Y; González-Rodríguez, O; Pascual, M; Quintanilla, R; Ballester, M
-
The value of gut microbiota to predict feed efficiency and growth of rabbits under different feeding regimes
Velasco-Galilea, M; Piles, M; Ramayo-Caldas, Y; Sánchez, JP
-
Opportunities and limits of combining microbiome and genome data for complex trait prediction
Perez-Enciso, Miguel; Zingaretti, Laura M; Ramayo-Caldas, Yuliaxis; de Los Campos, Gustavo
-
Ruminant microbiota : research status and impacts of microbiota on animal performance and health
Zened, Asma; Forano, Evelyne; Delbes, Celine; Verdier-Metz, Isabelle; Morgavi, Diego; Popova, Milka; Ramayo-Caldas, Yuliaxis; Bergonier, Dominique;...
-
Early socialization and environmental enrichment of lactating piglets affects the caecal microbiota and metabolomic response after weaning
Saladrigas-Garcia, M; D'Angelo, M; Ko, H L; Traserra, S; Nolis, P; Ramayo-Caldas, Y; Folch, J M; Vergara, P; Llonch, P; Perez, J F; Martin-Orue, S M
-
Diet, Immunity, and Microbiota Interactions: An Integrative Analysis of the Intestine Transcriptional Response and Microbiota Modulation in Gilthead Seabream (Sparus aurata) Fed an Essential Oils-Based Functional Diet
Firmino, JP; Vallejos-Vidal, E; Balebona, MC; Ramayo-Caldas, Y; Cerezo, IM; Salomón, R; Tort, L; Estevez, A; Moriñigo, MA; Reyes-López, FE;...
-
A gene co-association network regulating gut microbial communities in a Duroc pig population
Reverter, Antonio; Ballester, Maria; Alexandre, Pamela A; Marmol-Sanchez, Emilio; Dalmau, Antoni; Quintanilla, Raquel; Ramayo-Caldas, Yuliaxis
-
kernInt: A Kernel Framework for Integrating Supervised and Unsupervised Analyses in Spatio-Temporal Metagenomic Datasets
Ramon, Elies; Belanche-Munoz, Lluis; Molist, Francesc; Quintanilla, Raquel; Perez-Enciso, Miguel; Ramayo-Caldas, Yuliaxis
-
Whole-genome sequencing reveals insights into the adaptation of French Charolais cattle to Cuban tropical conditions
Ramirez-Ayala, Lino C; Rocha, Dominique; Ramos-Onsins, Sebas E; Leno-Colorado, Jordi; Charles, Mathieu; Bouchez, Olivier; Rodriguez-Valera, Yoel;...
